PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G046900.1
Common NamePOPTR_0014s04630g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 228aa    MW: 25605.8 Da    PI: 9.4833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G046900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20119169356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a++ a+ k++g+
  Potri.014G046900.1 119 YTGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETPEDAALAYDDAAFKMRGA 169
                         99******.***********9998..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-36118182IPR001471AP2/ERF domain
PROSITE profilePS5103223.261118176IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23118177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-31118177IPR001471AP2/ERF domain
CDDcd000182.07E-20118178No hitNo description
PRINTSPR003673.0E-9119130IPR001471AP2/ERF domain
PfamPF008477.4E-14119168IPR001471AP2/ERF domain
PRINTSPR003673.0E-9142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDSQSDFHQI ESIRQHLLDD ESSLGINTSN SSVYCQNMSF SKLFLTGNWS DILLKIDNSA  60
RIVACDTREP EPFNKQIQYW VPLNPIDSTI TATAKIKNEP EKNVPGASPT PAREKRNNYT  120
GVRRRPWGKY AAEIRDPKKN GARVWLGTYE TPEDAALAYD DAAFKMRGAK AKLNFPHLIG  180
FSDYQPVRVT HKRSSPLMSS SSLYSSSSSS LSWELDDGSP KLKRRMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-29115176263ATERF1
3gcc_A6e-29115176263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375129.11e-170ethylene-responsive element binding protein 1
SwissprotQ8L9K13e-53ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLB9MV951e-170B9MV95_POPTR; Ethylene-responsive element binding protein 1
STRINGPOPTR_0014s04630.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-51ethylene-responsive element binding factor 13